rs49210711 SNP Detail

Summary

• ID
  rs49210711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCGGAC TGGGAACATG
  GGTCATAGCT CAAGACTGGT TCTCCTGAGA TAGAATTTTC CTTGCCTTTC TTCACAGTAA
  TAAACCCCCA AAACTTAGGT GGCCTTTTTG GGGGAGTCTA TTTCTATTTA CCCCTGAAAC
  AGATAGCCAC TCTAGGCCAA AGAAAATTTG CTTCCAGTCC AGCTTAGTGA ATGGGACAAA
  Y
  TTATTGGTGT TGTCTGTAGG GACATGGGTG GCTTGGGCAA TTGTATCATC AAAAAGCCTA
  CCCCAGCATG GTGACAAGTG CTCAAAGCTA GTGACATCGC TGGTGTCCCC ATTAGTTGAC
  AGTCCACCTC CAAGCAGCAG ACAGGACGGT TTGCAGGGGT GAAGCAGGAG GGAGGGATGG
  AGTGTTGGAA CGTCAGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553207	ENSMUSSNP2204480	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49210711					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623253 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	538 bp distal
Rr602184	regulatory region 602184	244 bp distal
Rr602185	regulatory region 602185	29 bp proximal
Rr602186	regulatory region 602186	930 bp proximal
Rr602187	regulatory region 602187	1053 bp proximal
Rr602188	regulatory region 602188	1081 bp proximal
Tssr39650	transcription start site region 39650	747 bp downstream
Tssr39651	transcription start site region 39651	546 bp downstream
Tssr39652	transcription start site region 39652	466 bp downstream