rs49208557 SNP Detail

Summary

• ID
  rs49208557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33028737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTCCTG CTTCACTCAC
  CCAGTCCTTA GCAAGCCTGT ATAGTAAATA TTTATATTAT CTCTAATATG TAAGTGAGAA
  AAAAGTACTG CCAGACAAAT ACCAGGCCCC AGATGACAGA GTCTCACAGC AGCAAAGCTG
  TTCCAACTCA ACAAGTGCAA GTTTCAAGGT CACTATCAGA TATCCCTCTT CAACATCGCA
  Y
  TCAACATCTG ATAAGACAAG GAAGTGAAAG TAGGCACTGA GGACCTGGGG CTCTGGGGTC
  AGGTAACAGG GTAATGCTCC TGCATACTGA GGCTCTTCTA ACCTCACTTC CTCGGCTACT
  TTCAGTATAA CCACATAAGC ACTGTTAAAA GGCACCAGTG GTAATCCTGT ACATTTGTAT
  TTATAAAAAC AAATATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876160	NES15979034	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49208557					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876160	NES15979034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33028737 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	Intron
Rr628160	regulatory region 628160	1794 bp distal
Rr628161	regulatory region 628161	within coordinates