rs49208282 SNP Detail

Summary

• ID
  rs49208282
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88736914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTTTTGT TTTCAAGGTC
  ATATCTAATT GAATGTTGAC CTGTGTATCC TCTGTCATGG GCTGGACTTT AAAGGACTTT
  GTAACAAATG AAAAGGGCAG AGTGGCTATT CTCTCTGTGA CAATCTATAA GGGTCTAGGG
  ATCTGGAGAC AAAGGAGATA GTCCCAATTT CTTTGGCTTC TGCTCAGACC AGAATTTTTT
  W
  AAAAAATTAG ACTATTTAAT TTCTTTAAAA AAAAACAAAA GGGCTGGAGA GATAGCTTAG
  TGGTTAAGAG CATTGACTGC TCTTCCAGAG GTCCTGAGTT CAATTCTCAG CAACCACATG
  GTGGCTCACA ACCATCCATA ATGAGATCTG ATGCCTTCTT CTGGTCTGTC TGAAGATGGT
  GACAGTATAC TCATATACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135472244	ENSMUSSNP3271876	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49208282					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88736914 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	within coordinates
Gm64348	predicted gene, 64348	1612 bp upstream
Rr375322	regulatory region 375322	708 bp upstream
Rr579901	regulatory region 579901	1319 bp proximal
Rr579902	regulatory region 579902	1841 bp proximal
Rr579903	regulatory region 579903	1966 bp proximal