rs49205956 SNP Detail

Summary

• ID
  rs49205956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103106158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAAAGG GTCTTCTTGT
  GTGACCCAGG CTGGCTTTGC TGTTGCAGTC CTCTTGCCTC TCCTGTGCTG GGATGACAGG
  CAGGTACCAC CACGCCAGGT CCAACATACT ATAAATAGTA TACTCAATAG CAACAATACT
  ATAAATGGGT CTGTGTTTAG ATGAAACCAC TATTACAAAT AGAACCACCA TAAATCTATA
  Y
  GATATAACTA TTTTAACACA ATTTTAAAGT TTATGACTGT AAAACTAACA ACCAATAGCG
  TAGCTGAGAC AATGAACCCA GTAGTCTATG AACTGCTGAG ACTGACACCC AACTGGGTCT
  ATGACTGCAG CTCCTTGAGA GACTAAGGTT GGAGGATCAC AATTTTGAAG CTACCCTGGG
  GCAGCATTTT ATTCATGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147139494	ENSMUSSNP7102968	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321236282	CHEV_4_102921566	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49205956					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103106158 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	within coordinates
Rr596380	regulatory region 596380	896 bp proximal