rs49205887 SNP Detail

Summary

• ID
  rs49205887
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117737457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTATGTA TGTGAGGGTT
  GAGAGTTGGA GAGATAGCTC AGTGCACAAA GAACTTGCCC AACAATCCAG AGGAACTGCG
  CTCAGATCTC TATTGACCAA GTAAAGGCAG ATGCAATAGT TTGTCTGCAG TCTCAGTAAT
  GTTATAATGA GTTGAGATGC AGAGACAGGC AAATTCTCCA AATTTTGAGA CTCTCTCAAA
  T
  AGAGGCAAGA AGAGAACCAA CACTCAAGGT TGTTTGCTGA CCTCCACATC CTTTATAGCA
  CACACTCACC CATATGCATA TTCATGAGCA AGCACACACA TACCTGCATA GATGACAGAG
  TTGGGAGGCA GATTTGTTTG TATGTGTGTA TGTGTAATAT ATATGTGTGT GCTATATATC
  ATATATATGT ATATATGTGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133580925	ENSMUSSNP4267621	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49205887					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117737457 () rs orientation: forward

Symbol	Name	Function Class
Rr637359	regulatory region 637359	1688 bp distal
Rr637360	regulatory region 637360	1784 bp distal