GCTAG CGCGATCTAC AGAGCAAGTT Y CAGGACAGCC AGAGCTACAC AGTGA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss135474278 | ENSMUSSNP994861 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T | C | ||
ss320836904 | CHEV_3_89052202 | CHEVERUD | SCREENING_POP | f | SNP | T | C | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs49203990 | SNP | C | T | C | T | C |
Location: Chr3:89155587 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13413 | CpG island 13413 | 1356 bp distal | ||||||
Krtcap2 | keratinocyte associated protein 2 | Intron | ||||||
Rr579998 | regulatory region 579998 | 1836 bp distal | ||||||
Rr579999 | regulatory region 579999 | 1896 bp distal | ||||||
Rr580000 | regulatory region 580000 | 1713 bp distal | ||||||
Rr580001 | regulatory region 580001 | 1973 bp proximal | ||||||
Trim46 | tripartite motif-containing 46 | 1971 bp upstream | ||||||
Tssr30085 | transcription start site region 30085 | 1787 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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