rs49203990 SNP Detail

Summary

• ID
  rs49203990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89155587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG CGCGATCTAC AGAGCAAGTT
  Y
  CAGGACAGCC AGAGCTACAC AGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135474278	ENSMUSSNP994861	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320836904	CHEV_3_89052202	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49203990					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89155587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13413	CpG island 13413	1356 bp distal
Krtcap2	keratinocyte associated protein 2	Intron
Rr579998	regulatory region 579998	1836 bp distal
Rr579999	regulatory region 579999	1896 bp distal
Rr580000	regulatory region 580000	1713 bp distal
Rr580001	regulatory region 580001	1973 bp proximal
Trim46	tripartite motif-containing 46	1971 bp upstream
Tssr30085	transcription start site region 30085	1787 bp downstream