rs49200311 SNP Detail

Summary

• ID
  rs49200311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60378386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AAGTATAGCT TGAGCATAGG AGATATCAAA GCCCACCCCC
  ACAGTGACAC ACTTCCTCTA ACAAGGCCAC ACATAATCCT CATAGTGTCA CTCCCTATCA
  Y
  TAAGCATTCA AACACATGAG TTCATAGGGC CATACCTATT TAAACCATCA CAATGTATCA
  TTTCCATAGT TTTCCACATA ATGTTTTTGA ATTGTGGCTA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135219197	ENSMUSSNP3023498	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49200311					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60378386 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	1865 bp upstream
Rr397688	regulatory region 397688	1923 bp downstream
Rr397689	regulatory region 397689	1183 bp upstream
Rr577394	regulatory region 577394	1198 bp distal
Rr577396	regulatory region 577396	1691 bp distal
Rr577397	regulatory region 577397	1624 bp proximal
Tssr29248	transcription start site region 29248	1233 bp upstream
Tssr29249	transcription start site region 29249	1255 bp upstream
Tssr29250	transcription start site region 29250	1629 bp upstream
Tssr29251	transcription start site region 29251	1666 bp upstream
Tssr29252	transcription start site region 29252	1715 bp upstream
Tssr29253	transcription start site region 29253	1766 bp upstream
Tssr29254	transcription start site region 29254	1818 bp upstream
Tssr29255	transcription start site region 29255	1827 bp upstream
Tssr29256	transcription start site region 29256	1842 bp upstream
Tssr29257	transcription start site region 29257	1857 bp upstream