rs49197978 SNP Detail

Summary

• ID
  rs49197978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124034305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGCTCA GACAACCTCT
  GCTTCCTCTT CAGGGCTTGT CCTTGAGTCA TTGTACATAC AATGACTGAG CATTCCACTG
  ATACTCTGCA CACTGCTTGT GAGTTTCTGT GGTAACCATA TCCATCGAAT GAAGAAGTTT
  CTCTGAAGAA TGTAATGATT TCTGAGAGAC AGGTCTAGAG ATAAGAATTT AGAGTTTGAA
  Y
  GCTACTTCCT TTTAACAGAA TAACAGTGAT AGGTTCATAA CTGAGGACCT ATAAGTTCCA
  CAGCATGTGT TATTAATCTG ATTTATAATA AGGGGTCTGC AACCCTATAG GTGGAACAAC
  AATATGAACT AACCAGTACC CCTAGAGCTC ATGTCTCTAG CTGCATATGT AGCAGAAGAT
  GGCCTAGTTG GCCATCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135782949	ENSMUSSNP4836932	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320926569	CHEV_3_123943574	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49197978					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124034305 () rs orientation: forward

Symbol	Name	Function Class
Rr584580	regulatory region 584580	790 bp proximal