rs49197485 SNP Detail

Summary

• ID
  rs49197485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151793772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAGACA CCACCCTACA
  GAAATCACCC ACAGACACCA CCCTACAGAA ATCACCCACA GACACCACCC TACAGAAATC
  ACCCACAGAC ACCATCCTAC AGAAATCACC CACAGACACC ATCCTACAGA AATCACCCAC
  AGACACCATC CTACAGAAAT CACCCACAGA CACCATCCTA CAGAAATCAC CCACAGACAC
  Y
  ATCCTACAGA AATCACTCCT GTGTATCCTG GACCATGAAG GCACAAGTGT ACCGGATAAA
  GTACAAGTTC TCTGTCGTTA TGATTATAGG AAACTAGGGC AAAAGCCACT TTTAAAACTT
  TCAGGTAGAG GAGGTGGCTC TGTGGTTTGG TGGAGGTGCT TTCTGCCCAG CCTTAGAACC
  TGAGTTCCAC CCCAGAACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321027967	CHEV_3_151751099	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49197485					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151793772 () rs orientation: forward

Symbol	Name	Function Class
Gm31881	predicted gene, 31881	within coordinates
Rr587443	regulatory region 587443	1023 bp proximal
Rr587444	regulatory region 587444	1270 bp proximal