rs49196855 SNP Detail

Summary

• ID
  rs49196855
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116696920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGTTTTT AAGAAGGTGG
  TGTTGGCCGT TTACATATGT GGGAATGTGA TTTTTCTCTC GATATTCTTA TCTGCAATCA
  ACCACATATG AGCACAAAAA GACTTTTATT TTTTATTTTT TGTGGGCCTG GGTCATGATG
  ATCATTAAAA TGAGGAGAGA CCTGAAGCTT GTGCCGACCA CCTGCAGCAC CTACTAAGTC
  M
  GAAGACCCAT GGGCATCGCT ATCGAGGAAC GCTGAAGTCT GGGTTTCCCA GCTCACATTC
  AAGTGGGCTA AATAACCTGG GCCTTTATGT GTAATTCTGC ATCCCTAAGG GAACATTGTA
  CCTGAGATGA CATGACTCTC AGCATCTCAT GCCAGATTTA AAACTGTAAA CTGGAATGGA
  TAGCAGATGA AGACAATTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60435757	NES15935121	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	C	A	C	C	C	C	C	A	C	C	A
ss135674987	ENSMUSSNP266124	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49196855					SNP	C	C	A	C	A	C	A	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435757	NES15935121	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116696920 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			818 bp proximal
Rr583801	regulatory region 583801			849 bp proximal
Rr583802	regulatory region 583802			1090 bp proximal
Tssr31391	transcription start site region 31391			306 bp upstream
Tssr31392	transcription start site region 31392			392 bp upstream
Tssr31393	transcription start site region 31393			426 bp upstream
Tssr31394	transcription start site region 31394			448 bp upstream
Tssr31395	transcription start site region 31395			1093 bp upstream