rs49196780 SNP Detail

Summary

• ID
  rs49196780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114294687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGAGAGCAGA ACGGTGACTG CTGCAAAGAA GCTGCTTGAA
  CACTAAGCAG GACCCTGGGT GGACCACCCT TCTCAGCTGC CCAGCTAAAA TTTCCATTTT
  Y
  TAAGTTGTTG CCAAAGCCAA ACCAAGCACT GGTCTGACTT CACTACTTTA TCTAGAAAAC
  TTTGGGGGTG CCAATTCATT GACTTCAGTA CTCTATCTAG C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147268718	ENSMUSSNP6671949	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49196780					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114294687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597570	regulatory region 597570			1722 bp distal
Rr597571	regulatory region 597571			1741 bp proximal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant