rs49196475 SNP Detail

Summary

• ID
  rs49196475
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141164520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCAGATAG AGAACTCCTA
  TACACAAAAT AATAAATAAA TACATCTAAA AAATAAAATA CATCGGTGGG TACATTACCA
  GAGAAATGGG GAAACTTTTC TATAGACTTA ATATGCTATC TGTCAGTTTA GCTTCTGGAT
  TGGTGGACAC CAGTTGTCTG CTAAATCTAT AAACTCTAAA AGGTTTTTGT CTGTTGTCAT
  W
  ATCTGTTCGT TCTGACACAG GTTGAAGGCT GCTCCAGAGG GCTGGAATTT GGCCCAACGA
  TAGGGGAATT AACCTCTGGA TGGGCAACAC TCCAGCCTTT CCACTGTGTT GATATTCTTC
  TTTTTTTTTT TTTGTTTTTT GTTTTTCAAG ACAGGGCTTC TCTGTGTATC CCTGGCTGTC
  CCAGAACTCA CTCTGTAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147736951	ENSMUSSNP6661145	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49196475					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141164520 () rs orientation: forward

Symbol	Name	Function Class
Rr603766	regulatory region 603766	1978 bp proximal
Srarp	steroid receptor associated and regulated protein	1104 bp upstream