rs49196324 SNP Detail

Summary

• ID
  rs49196324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152658377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGGAAAC AGGCTTTGTT
  TTAGGGGAGC AATTCCTCAA AACAGAACAG ACATTTTGTC TTCATGAGTA GAAAAGTTGT
  GCTTAACTAT AATTTCTCCA GTCACTGTTA AAGTGAGAGT TAACTATTCT ATTTGTTTTC
  TTTTATGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC ATGCTCATGA
  Y
  GGTCAGAGTG TAGTCTTATT AGCTGCTGTT CCTCAGGCTC TGATTTTGTT TCTTTCTGAC
  AGTAACTTTC ACTGGCCTGG AGCTTGCCTA AAAGACGACA GTGGCTGGCC AGTGAGCCTC
  TGGGTTCTGC CTGTCTCTGC CTCCCCACTG TGGGGGTTAT AAGTACACAC CACCATGTCT
  TACTTTAAAA ATTGTCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136105134	ENSMUSSNP5728724	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321029353	CHEV_3_152615704	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49196324					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152658377 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587635	regulatory region 587635	1614 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron