rs49194875 SNP Detail

Summary

• ID
  rs49194875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146735171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGGACT GATTCTGACC
  TATGAGCTGT AAAGGGATGT TTGTCATTGT TCATTTGCAG TACTTAAGAG ACGTAAGTTC
  TCCAGGCTCT TTCCCACCTG CAAAACAGGA GGAGATTGTA AGATAGTCAA GATTCTGATG
  AGCCCTACAT AGATCCCTGA GCACCTCCAG GAGCAACATG GCTTCCCAGA CCCAACCTCA
  R
  GCGTGAGTGA GAAACATTTA CTATGGTAAG TCATGGGTTG ACTTGATCCT AAAACATGTG
  CTAGTGTCTT GTCCTCGATG TGATGTACCT AGAGATGCCC TGGTGTATCC TTAGCGATTT
  AATGGTTGAA TTGTGCCGTC ATGGAAGGAT GTGGCCAGAC GTAAGTGGCT CATGTGGACT
  TACTAGTGTG ACTGCAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096809	NES16602382	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49194875					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096809	NES16602382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146735171 () rs orientation: forward

Symbol	Name	Function Class
Rr587113	regulatory region 587113	493 bp proximal
Rr587114	regulatory region 587114	865 bp proximal