rs49193401 SNP Detail

Summary

• ID
  rs49193401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:132684373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACTTTT ACAAGTGGGA
  GTAATTTCAT GAGGGCTCAT ATATTCCATA TATTCTTTAC ATGATAACTA AATAATAATT
  TACCAGGTTA AAAAATTTAA TAAACCTTAT AGTATGTAAT ATATAATATA TTTAATAATA
  TAAAATTGTT ATAGTTTAGC AAGTATGGGT CTAAAAGCAG AATGAAAAAA ATTAAGAAAC
  Y
  TCTGAGTTTA TATTTAGTAT ATGATGAAGT CACCTTGATC AATGGAGAAA ATGTAATTCT
  TTTGTTTTTT CAGGGTTTCT CTGTAGCCCT GGCTGTCCTG GAACTCACTC TGTAGACCAG
  GTTGGCCTGG AACTCAGAAA TCTGCCTGCC TCTGCCTCTG AAGTGCTGGG ATTAAAGGCA
  TACGCCATCA CTGCCTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135915673	ENSMUSSNP5451961	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49193401					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132684373 () rs orientation: forward

Symbol	Name	Function Class
Rr585492	regulatory region 585492	1636 bp proximal
Tssr35743	transcription start site region 35743	1401 bp upstream