rs49193027 SNP Detail

Summary

• ID
  rs49193027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCT ACTCAACACC AAATGGTCAG
  R
  CCTGAGAACA TACACACAAG TAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135359169	ENSMUSSNP4441157	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A		G
ss320807527	CHEV_3_78397813	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49193027					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501198 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	626 bp proximal
Rr578424	regulatory region 578424	1045 bp proximal
Tssr33603	transcription start site region 33603	448 bp downstream
Tssr33604	transcription start site region 33604	518 bp downstream
Tssr33605	transcription start site region 33605	531 bp downstream
Tssr33606	transcription start site region 33606	546 bp downstream
Tssr33607	transcription start site region 33607	622 bp downstream
Tssr33608	transcription start site region 33608	680 bp downstream