rs49190600 SNP Detail

Summary

• ID
  rs49190600
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141688338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATA TATATATTAT GAATGACCTA
  A
  ATCATAAGAA AGCAGTCTCA TAATT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136009123	ENSMUSSNP4523196	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320997340	CHEV_3_141645541	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49190600					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141688338 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
Rr586376	regulatory region 586376	562 bp distal
Rr586377	regulatory region 586377	324 bp distal
Rr586378	regulatory region 586378	223 bp distal
Tssr35923	transcription start site region 35923	356 bp upstream
Tssr35924	transcription start site region 35924	340 bp upstream