rs49190564 SNP Detail

Summary

• ID
  rs49190564
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112187345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAGGGCAG GAAGGTGAGT GAGCTCTTCA GAAGAGAAAA
  ACATCCAGCA GGTCAAACTT GCATTGCTGC ACAGTGAACA AAATCCAACA AAACCAAACC
  G
  CGGGATCCCA TTACATCCCT CTGTGGCTCA TCCCTACTTC TCTACCCCCT ACCCCCGCCC
  TCCTCACCAC CAGTTAATCA CAGAACCTAG CCTTCCTGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133558922	ENSMUSSNP5253847	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49190564					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112187345 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	324 bp upstream
Rr636307	regulatory region 636307	1442 bp distal
Rr636308	regulatory region 636308	1403 bp distal
Rr636309	regulatory region 636309	within coordinates
Rr636310	regulatory region 636310	310 bp proximal
Rr636311	regulatory region 636311	770 bp proximal