rs49189199 SNP Detail

Summary

• ID
  rs49189199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40754415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA AAGCCCCTGC TGCGCATGCG
  Y
  GTCGGTCTCC GCCTCTAAGA AGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60400514	NES15892873	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49189199					SNP	T	T	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400514	NES15892873	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40754415 () rs orientation: forward

Symbol	Name	Function Class
4921509J17Rik	RIKEN cDNA 4921509J17 gene	1516 bp downstream
Cpgi13112	CpG island 13112	within coordinates
Plk4	polo like kinase 4	48 bp upstream
Rr397650	regulatory region 397650	1297 bp downstream
Rr575856	regulatory region 575856	969 bp distal
Rr575857	regulatory region 575857	1293 bp distal
Rr575858	regulatory region 575858	within coordinates
Rr575859	regulatory region 575859	129 bp proximal
Tssr28972	transcription start site region 28972	33 bp upstream
Tssr28973	transcription start site region 28973	77 bp upstream
Tssr28974	transcription start site region 28974	798 bp upstream