rs49187900 SNP Detail

Summary

• ID
  rs49187900
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120898952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTCCCG CGAGGCAGGG
  ACCACAGCAC CATCCCGTTG TACAAAATCA GAGCTTCATA ATGGCAATTT CGGCCGGTGT
  CAGGAGCTAA AGTCTTGAAA ATATGTATAC ATTCTAAACA ACAAACATCT AGCAAAGCTC
  TCATTCATTT TACGCGTGAA GACCAATAAA TAACTGCTCT GTAATAATGA CTGCTGCTGC
  S
  GAGTGGTTAA AAGGAAGAGA CTTCACACGG GGAGATGAGG GGTGGGGTGG CTAGAGAACC
  ACTATTTTAT CTTGCTTACG TTGTTATAGA CTCAACTCTG TCACTTAACA TAATAAGCCG
  CATAAAGTGA CAAAGGAGGA ATCTCTCTGG GTCAGAGCTC CAAAAACACA CCAGTCACTG
  TCCCGCCTCA TCTAGCTAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60441580	NES15944814	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49187900					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60441580	NES15944814	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120898952 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	19 bp upstream
Rr397968	regulatory region 397968	161 bp downstream
Rr584004	regulatory region 584004	within coordinates
Rr584005	regulatory region 584005	275 bp distal