rs49184384 SNP Detail

Summary

• ID
  rs49184384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119493876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGG CCAGTTAAAA GAGCCAAATT
  R
  AGAAGTAAAA GTAAGCCTGA CATGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147338509	ENSMUSSNP7191992	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320476612	CHEV_2_119489131	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49184384					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119493876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	442 bp distal
Gm75025	predicted gene, 75025	1709 bp downstream
Gm75032	predicted gene, 75032	1698 bp upstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	574 bp upstream
Rr397235	regulatory region 397235	423 bp downstream
Rr563557	regulatory region 563557	608 bp distal
Rr563558	regulatory region 563558	84 bp distal
Tssr25825	transcription start site region 25825	560 bp upstream