rs49181552 SNP Detail

Summary

• ID
  rs49181552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121396475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCAACAGT GCTAAGAACC CCACTTGGAT GGGATTTGGG
  CCTTTGTAAA GGGTTTGAGG GTAAGGGTTT GCCTTCTCTG TTTTCCCCTC TGTGTGAAGA
  Y
  GCTGCAGCTT CTACTCTGGA AGATTCAGCA ACAAGATGCT ATCTGGAACC CTGCAACTGG
  TTCTTAGTAG ATCTGAACCT ACTAGTGCTT TACTCTTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135724880	ENSMUSSNP2265348	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320904164	CHEV_3_121305744	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49181552					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121396475 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	1304 bp downstream
Rr584125	regulatory region 584125	225 bp distal