rs49176242 SNP Detail

Summary

• ID
  rs49176242
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTA ACTCTGTAGA CCAGGCTGGC
  G
  TCGAACTCAG AAATTTGCCT GCCTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145506410	ENSMUSSNP3012256	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49176242					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421188 () rs orientation: forward

Symbol	Name	Function Class
Rabif	RAB interacting factor	1189 bp upstream
Rr396314	regulatory region 396314	1014 bp upstream
Rr418926	regulatory region 418926	1711 bp distal
Rr418927	regulatory region 418927	280 bp proximal
Rr418928	regulatory region 418928	708 bp proximal
Rr418929	regulatory region 418929	1280 bp proximal
Rr418930	regulatory region 418930	1721 bp proximal
Tssr8899	transcription start site region 8899	1178 bp upstream
Tssr8900	transcription start site region 8900	1286 bp upstream
Tssr8901	transcription start site region 8901	1536 bp upstream