rs49175347 SNP Detail

Summary

• ID
  rs49175347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89234210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAAGGC CAGCGTGAAA
  AGGAGCCCTA ACTTCCTTTT TCCAGCAGAA TCAGCTGACC TGTGACATAA ACATAATGAA
  TCAGCAAGTT TCTATCATGT AACACACCGT CTAGAAGCTT AAGGCTCAAA AGAACCAAGC
  TCTGGGCATC TGGGTACAGA CCTAACCCAG CTCTACCAGG CTCTCCCATA CCTTGATTAA
  Y
  AGATGGGGCC ATTGCTCACG CCCAGGCTCC CTAGCTGAGC CTCAGCTTCT CATCCTCCTA
  CAATGGTTGG CTGGCTCACT CCATGGCAGC CTCTGCAGAC AGCAAGTTCT TATGCATGTT
  TCCCAGTGCC CCTTGGCTAA ACCAAGTCAT AAGGCCGGGC CTATTCCAAA TGTGAGTAAG
  TAATAAACCC CTTCTGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133370811	ENSMUSSNP2087121	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49175347					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89234210 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	509 bp downstream
Gm66553	predicted gene, 66553	within coordinates
Rr634087	regulatory region 634087	778 bp distal
Rr634088	regulatory region 634088	964 bp proximal
Tssr62001	transcription start site region 62001	1018 bp downstream