rs49175272 SNP Detail

Summary

• ID
  rs49175272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133943534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAATGTAA TTCACAGAAA
  CGGAAGCTGT ATGTGTATTC TTACTGTGTC TTTCCCCCCA GACCCTAGCA AGTGTCAGGA
  ATATTTAGCC AGGAGGATTT GGGGGGCACC TTTGTATTGT CATCAGGCCT CAGAAGGGAG
  CAGTTTTCCC TAATGTGAAA CCACAGAGGT GGTGCCTGAG TGATTAGGGA CTTGCTGTGA
  Y
  TGAAGGATGC CTGCCAGTTT CTAATCCAGC CGGAGGGAGG TTCCTTATCT TGCTTTACTT
  TGCCTAATAG GGATTTGTTT ACATAAACCC CCCTTTTTTT AGGGTGCCTC ATCAGTAGAC
  CTTGAAGTTT TCAAATTTGA AGTTTGGACA TAATGCTTCA TTAATCTAAT TATAAGCATA
  ATGACTATAA TTGATATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135919717	ENSMUSSNP5258265	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49175272					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133943534 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13850	CpG island 13850			1134 bp distal
Cpgi13851	CpG island 13851			1432 bp proximal
Cxxc4	CXXC finger 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr585624	regulatory region 585624			1272 bp distal
Rr585625	regulatory region 585625			within coordinates
Tssr31786	transcription start site region 31786			1400 bp downstream
Tssr31787	transcription start site region 31787			1273 bp downstream
Tssr31788	transcription start site region 31788			1231 bp downstream
Tssr31789	transcription start site region 31789			1179 bp downstream
Tssr31790	transcription start site region 31790			1481 bp upstream
Tssr31791	transcription start site region 31791			1513 bp upstream