rs49172264 SNP Detail

Summary

• ID
  rs49172264
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37782087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAAGCT CAGTGAGCAA
  TGTGCTTGCT GAATAAACGT GAGGGCCTGA ATTCGAGCCC CAGGACCTAC AACCTATGTC
  AAGAAAGGCA GGTACATAGC TCTTGGGAGG CAGAGGCAGG CAGATTTCTG AGTTCTAGGC
  TAGCCTGGTC TACAAAGTGA GTTCCAGGAC AGCCAGGGCT ACACAGAGAA ACCCTGTCTC
  G
  ACCCCACCCC CCCCCCCCAA AAAGAAAGAA AGGCAGGTAC AGTGGGGCAC TTGTAGTCTC
  AATGCTAAGG AGAGAGAGGC AGGGGATAGC CATGTGGCTC ACTGCAGGCC AGCCTTGCTA
  AGATGGTGAC CCCAGCCCAA TGATAGACCA TGGCTCAACA ACAGGAGGGC TCCTGACAAG
  TGACACTCAA GACTGACCCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134812124	ENSMUSSNP754254	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49172264					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37782087 () rs orientation: forward

Symbol	Name	Function Class
Gm36620	predicted gene, 36620	within coordinates
Rr575551	regulatory region 575551	846 bp distal
Rr575552	regulatory region 575552	192 bp proximal
Rr575553	regulatory region 575553	1206 bp proximal