rs49169875 SNP Detail

Summary

• ID
  rs49169875
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147516069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTTAACATTC TAGAGTTTCT CTGAACTTCT AGACCTGGTT
  GATAAAGATT CTAGTTACCG CGCACAAAGG AAAATCCAGA GAAGCAGTGA GAAATTGTAT
  T
  CTGGGGCTTA GGCACCTCTG CATCCATTTG CTTATGTGCA TCATTACACT AAATGTAAGG
  ATTCCAGCCA GAGTTCTGGA AGTTTAGGGA TACCACAGTC T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147959972	ENSMUSSNP1703154	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs49169875					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147516069 () rs orientation: forward

Symbol	Name	Function Class
Rr398816	regulatory region 398816	1195 bp downstream
Rr398817	regulatory region 398817	322 bp downstream
Rr604487	regulatory region 604487	543 bp proximal