rs49169702 SNP Detail

Summary

• ID
  rs49169702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18438622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTTTTG AGATAAAGAG
  CATTTTATCT TTTCTAGATG CTAAAAACAA ACATGGGAAG GAACTTCCTG CATTTTGTAT
  TCACAGCTAT AGTGTGATTT TACCAATTGA AGATCTGTGG CAATCCTGCA TCAAGCAACA
  TTATTAAGGA AATCATTTCT TCCTCCCCCA GTAGCTCCAA TAATAACAAT TTCAAGTTGT
  R
  GACAGTCTTT TTTTAGACAC AATACAACTT ATAAGACTAG AGTGCATCAT AAAAAGACTT
  GCATTCATTG CAAAATCAAA AGACTTCTGT TACTTCAGTA TTGTCTATAG TTTAGTGGTT
  TAGACACAAA CTTTCATCGT ATTCTCAATA AAGCCAAAAC ATGCTCAAGT AAAATTTTAG
  CCATCTACAG CAGAGAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133034826	ENSMUSSNP728294	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49169702					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18438622 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Rr626924	regulatory region 626924			1910 bp distal