rs49168041 SNP Detail

Summary

• ID
  rs49168041
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108307456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCTGCTCC CACACCCTGC TCTGGGATTG CAGGCTCAGG
  CCGCTGTGTC TGATAGTACA TGGGTGCTAG GTGTCCTAAC TGAAATCCTC ATGCACGTGC
  M
  GCCGACACTT ACCAGCAGTG TCAGTTCTCC AGCCCTTTAA GCAGTGGTGG CTTGTTGGGT
  GCTTGTCTTG TTGGTCACAC AAGTCCTTGT AACAGAAAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133499665	ENSMUSSNP1819442	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49168041					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108307456 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr399812	regulatory region 399812	1885 bp downstream
Rr636077	regulatory region 636077	within coordinates