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rs49165826 SNP Detail
Summary
  • ID
    rs49165826
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:89365367 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCAAAACAC AAAAATTAGC
    AAAAAATAGT TTGGGATATA GTTCAGTGAT AGCTAGCTGA GCATGTGCAA GCCCTTTAGT
    TTAATCCCCA GTACAACAGA CAAACACACT AAATAAACAA GCAAGCAAAT ATACAAGCCA
    CAGGAAACTA ATAAGTGAAA AGTGTCAATT AAATCCATTG TATAAACAAC AGTATAATAA
    Y
    AATTTTGGAA TGTAATTTTT ACAGAACAAA GCATCAGTAC ATATAGGAGT TGAAGACTCT
    TAATGTTGAC TTAAATGAAT ATACATGCGA GTAATACCTA TTGCAGCACA ATTCTGTAGC
    CTATTAATAG CTTTCTCTCC TTAAAGAAAA TGAAGTTGAA AGTTCCAAAA GGTTAAGAGA
    ATTCTTTGAA GTTAGAATGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
MSM/Ms
ss146950025 ENSMUSSNP6230893 ENSEMBL ENSEMBL_Sanger f SNP T T C
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
MSM/Ms
rs49165826 SNP T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:89365367 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm12610 predicted gene 12610 within coordinates
Gm54238 predicted gene, 54238 within coordinates
Rr595205 regulatory region 595205 1986 bp distal
Rr595206 regulatory region 595206 975 bp distal
Rr595207 regulatory region 595207 1619 bp proximal
Tssr37785 transcription start site region 37785 504 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory