rs49165826 SNP Detail

Summary

• ID
  rs49165826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89365367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAACAC AAAAATTAGC
  AAAAAATAGT TTGGGATATA GTTCAGTGAT AGCTAGCTGA GCATGTGCAA GCCCTTTAGT
  TTAATCCCCA GTACAACAGA CAAACACACT AAATAAACAA GCAAGCAAAT ATACAAGCCA
  CAGGAAACTA ATAAGTGAAA AGTGTCAATT AAATCCATTG TATAAACAAC AGTATAATAA
  Y
  AATTTTGGAA TGTAATTTTT ACAGAACAAA GCATCAGTAC ATATAGGAGT TGAAGACTCT
  TAATGTTGAC TTAAATGAAT ATACATGCGA GTAATACCTA TTGCAGCACA ATTCTGTAGC
  CTATTAATAG CTTTCTCTCC TTAAAGAAAA TGAAGTTGAA AGTTCCAAAA GGTTAAGAGA
  ATTCTTTGAA GTTAGAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146950025	ENSMUSSNP6230893	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49165826					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89365367 () rs orientation: forward

Symbol	Name	Function Class
Gm12610	predicted gene 12610	within coordinates
Gm54238	predicted gene, 54238	within coordinates
Rr595205	regulatory region 595205	1986 bp distal
Rr595206	regulatory region 595206	975 bp distal
Rr595207	regulatory region 595207	1619 bp proximal
Tssr37785	transcription start site region 37785	504 bp upstream