rs49163620 SNP Detail

Summary

• ID
  rs49163620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99567286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGATCCG GCGGCATTCT
  CAGGCTTTTG ATAGGCATAG TTAAAGTCTC CGGGTGTCTT CCCTCCGCTG TCTTTCTCCA
  CACTAGATGT AGTCAAATCT CTATTCAAGG CCAGATGATG TTGCATTGTA TCAAATAGCA
  TTGAGGAGCG GAAGCCATAG GGCTCTGCTG TTGCTGCATC TATTGGTGGG GAAGAGGAGG
  Y
  TTGGTGAGCT GCTGCAGTCT CTTTAGCTGC AGAGGTAGAA TCTGAAAAGC CAGGTGAATA
  TAAAGGTGAG GACTCTCGTG GGGTGAGTGG AGAAATATCA GATTTCGGAG AGAGCTTCTC
  TCCTTCCAGG CTCTGCACTT TTTCAGACGC AAGTGAGGCA TATAAGGACA TCTCTCTGGG
  AGGAACAACA TCAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52684838	NES15534673	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49163620					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684838	NES15534673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99567286 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-NonSynonymous
Tssr4149	transcription start site region 4149	1143 bp downstream
Tssr123696	transcription start site region 123696	877 bp upstream
Tssr123697	transcription start site region 123697	686 bp upstream
Tssr123698	transcription start site region 123698	536 bp upstream
Tssr123699	transcription start site region 123699	452 bp upstream
Tssr123700	transcription start site region 123700	405 bp upstream
Tssr123701	transcription start site region 123701	380 bp upstream
Tssr123702	transcription start site region 123702	361 bp upstream
Tssr123703	transcription start site region 123703	309 bp upstream
Tssr123704	transcription start site region 123704	253 bp upstream
Tssr123705	transcription start site region 123705	39 bp downstream
Tssr123706	transcription start site region 123706	257 bp downstream
Tssr123707	transcription start site region 123707	446 bp downstream
Tssr123708	transcription start site region 123708	654 bp downstream
Tssr123709	transcription start site region 123709	823 bp downstream