rs49161448 SNP Detail

Summary

• ID
  rs49161448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:96456346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT TTGTTTTAAC CAAGGTCTTA
  Y
  ACTGGAGCCT GGAGCCCGCT CTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135516728	ENSMUSSNP45890	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320842026	CHEV_3_96352953	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49161448					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96456346 () rs orientation: forward

Symbol	Name	Function Class
Rr397861	regulatory region 397861	1361 bp downstream
Rr581314	regulatory region 581314	1047 bp distal
Rr581315	regulatory region 581315	1460 bp distal
Rr581316	regulatory region 581316	402 bp proximal