rs49159801 SNP Detail

Summary

• ID
  rs49159801
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCCTGTT AATTTTTCAC
  AGAACTGTGA ACAGATTAAA GTCCCCTCAC AGTATAGCCT TTCCACCGTG ATCCCAAATG
  GTAAATTCAA ACAGACACAC ACTTAAAATG GCCCAGCAGA GCCTCAAAAG ACTCCACATT
  GGCCCCAAGA CTACTGGGTC CCAGTTAGGA TTTATCCAAG TCATTTTGGG TCCCCAAATT
  M
  CTCCCTCACA TGTATCTGTG CTGGGCCCAT GCTGGCTCCC AGCCACCAGC ACAGAGATGG
  CCCACACAGG GAAACAATAG CAATGAAAGG GTCTTTCTGT CTCTTTGCTT AAATGGGAGG
  AAGCCTGTGA CATTTTCCAA GTCCTGAGGT GGTCCAAGTC CTGCCCTTGC TCATCCGGAC
  ACCCTCAGGC ACTGGCTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147543397	ENSMUSSNP924341	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49159801					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1583 bp distal
Rr601980	regulatory region 601980	1902 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1608 bp proximal