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rs49158742 SNP Detail
Summary
  • ID
    rs49158742
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr3:145910035 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GGGTTTGGAT ACCCAAGCTG TCTCCTTCCT AGCCCTTCTG
    TTCTCTGCCT TTGTGGGGGA GATGCTTCAT TGTAACAGAA TGGCAGAATA GCCGGAGCTT
    T
    CTTTGTGCAA GGAAGGACTT CTGTTTTCAA ATAACAACTT GTTAAGGCTT TGAACTCAAA
    TGCTGCTGGC GCCGATGGGT AGCTGAATAT CGGTTCTTA                       
    
    T = T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
ss136042576 ENSMUSSNP5542526 ENSEMBL ENSEMBL_Sanger f SNP T T
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
rs49158742 SNP T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:145910035 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr586967 regulatory region 586967 214 bp proximal
Rr586968 regulatory region 586968 982 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory