rs49158021 SNP Detail

Summary

• ID
  rs49158021
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154597720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGAGGAC ACAGAGTCGG
  GGAGGTTAGG AAAGATGTAG GTAGAGAAAT GAGACTAAAG CTACCAGACA CTGGAGGAGG
  CAAATAACAG AACTACCAGA ACTTTGCTAA ATAGAAACAG CATCAAACTG CCTTCTAAAT
  ACGTATTTCC AAACACAGAG ATCAGTGAAG TTCCCAGTCT TTGTCAGAGC AGCTCATTTT
  W
  AAAATGGGCA GTGAGTGGTC GATATAGAGA CTCAAAACCA GTCAAGTACC CGAGGAAGGT
  TCAGAATAAA TAGAATCTCT CTCTCTCGCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CACACACACA CACACAGCCA CACACACACA CACACACACA GCCACACACA
  CACACACACA CACAGCCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136120289	ENSMUSSNP4453053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49158021					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154597720 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587909	regulatory region 587909			871 bp proximal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant