rs49156687 SNP Detail

Summary

• ID
  rs49156687
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88736940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGAATGT TGACCTGTGT
  ATCCTCTGTC ATGGGCTGGA CTTTAAAGGA CTTTGTAACA AATGAAAAGG GCAGAGTGGC
  TATTCTCTCT GTGACAATCT ATAAGGGTCT AGGGATCTGG AGACAAAGGA GATAGTCCCA
  ATTTCTTTGG CTTCTGCTCA GACCAGAATT TTTTTAAAAA ATTAGACTAT TTAATTTCTT
  W
  AAAAAAAAAC AAAAGGGCTG GAGAGATAGC TTAGTGGTTA AGAGCATTGA CTGCTCTTCC
  AGAGGTCCTG AGTTCAATTC TCAGCAACCA CATGGTGGCT CACAACCATC CATAATGAGA
  TCTGATGCCT TCTTCTGGTC TGTCTGAAGA TGGTGACAGT ATACTCATAT ACATAAAATA
  ATTTCTTTAA AAATATATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135472247	ENSMUSSNP6878960	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49156687					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88736940 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	within coordinates
Gm64348	predicted gene, 64348	1586 bp upstream
Rr375322	regulatory region 375322	682 bp upstream
Rr579901	regulatory region 579901	1293 bp proximal
Rr579902	regulatory region 579902	1815 bp proximal
Rr579903	regulatory region 579903	1940 bp proximal