rs49156500 SNP Detail

Summary

• ID
  rs49156500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141874712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GAGAGGATGG AGTGACTAAG GGGCAGGGGA GAGCGCGAGA
  GGACCGAAGA GTGTGGTTGT CCCATGAGCG CCTTGGCTCT CCCAGCGGGT CCGAGGAGCA
  K
  GCGAGGCAGG TGGCTGGTCC CGAGCTCGGT GCCCCTTGGC GTCCCCCCAA GCGCTCGTGG
  CCCGGGAGCG CCCCGCTGTC CGGGTGTCCC GCTCCCCGAG G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136010868	ENSMUSSNP6106095	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49156500					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141874712 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
Cpgi13885	CpG island 13885	within coordinates
Rr586389	regulatory region 586389	within coordinates
Rr586390	regulatory region 586390	252 bp proximal
Rr586391	regulatory region 586391	348 bp proximal
Rr586392	regulatory region 586392	507 bp proximal
Tssr35928	transcription start site region 35928	245 bp downstream
Tssr35929	transcription start site region 35929	360 bp downstream