rs49154092 SNP Detail

Summary

• ID
  rs49154092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159429795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGAGTT AGCCTTTCTC
  TGAGAAGACT ACCTGTGAAT ACAGTTTGCA CCTGCTTTGT TTAGGGTGTA CCTTTGTTTA
  ATGGTTCACC TTTTAGAATG TCCTGGTCTA GACAGCACAT TATGAGATCC ATCAATTCTT
  AGCAGTCTGT TCTTGTATAT GTGGCCATAT TTGTGCTCAC TGTGTGGGAG ATACAAGTGT
  Y
  TGGGGGTAGA GAAAACTTCA AGAGAGGCAT TCTCTTGGTT TTGGTTTTGT TTTGTTGTTT
  TTCTGTGTCT CCTATTTCCA TTAGTGTTAA AGGAGGTGTT CGAGAGTTGC AGAGAACACC
  TATAGGGAAA TGTAGATGTA AGAAAATGGG AAAACCAGAA AAGCACATGC ATTAGCAAGT
  CCCGAGTTAC CAGAGTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148134195	ENSMUSSNP4636556	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49154092					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159429795 () rs orientation: forward

Symbol	Name	Function Class
D2Mit411	DNA segment, Chr 2, Massachusetts Institute of Technology 411	1345 bp distal
Rr568924	regulatory region 568924	1104 bp distal
Rr568925	regulatory region 568925	805 bp distal
Rr568926	regulatory region 568926	472 bp distal