rs49154064 SNP Detail

Summary

• ID
  rs49154064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180430418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTGTGA TGAGGGTGAC
  TCTTGTCAAA ACTCCTGGTC AACCTGCTTG GGCTTTGCTC TCTTCTCCCT CCTTTGGTGT
  GGGACTTGGG AAAAGGGGCC CAGGAAGCCT ATCAGCACCT GCTAAACAGG GTGGCAGGGT
  GACCTCTGGA AGGACAACTC CAAGCCAGGA ACTCAGTGAC CTAGTTTCCT GGTGTTTCTC
  R
  GTGGAGGAAG TCAGCCTGCA GTGCGGCAGC TATCCAGGAC CTCATTGGCA GAACTGGATT
  GTCGCTATCT GGCTGCAGAG GGAGATCAGA TGCCTGCCCA CTGGGAACAT GAAGTGTGGA
  GTGATGGGCA TGGTGTTCTC TTATCTGTGA GCTTGGGGAT ATCTGATGCC TGTCTGGATC
  TCCCCTTCTT CCCCCCCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148393336	ENSMUSSNP6163146	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320632347	CHEV_2_180523330	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49154064					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180430418 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	within coordinates
Rr572846	regulatory region 572846	1603 bp distal
Rr572847	regulatory region 572847	1675 bp distal
Rr572848	regulatory region 572848	within coordinates