rs49153814 SNP Detail

Summary

• ID
  rs49153814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126340127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGAACCA GAGGAAAGAA AGACCAGGAG CTGAGGAGAA
  TGAGCCGGTT CAAGAGCAAT GACAGAGTGA AGGGAGGATT CACCCTTAAA AGACCGGTTC
  R
  GGAAGGGCGT GGCACAGGAG AGACCTCAGG AAACCGCAGT CTAGAGAGTA AATCGGGGAA
  AGGGAAGGGG CCCAGAGTAA GGAAGAAACG TGTTTCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147505061	ENSMUSSNP4926184	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49153814					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126340127 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1683 bp distal
Rr564346	regulatory region 564346	664 bp proximal
Rr564347	regulatory region 564347	1236 bp proximal
Rr564348	regulatory region 564348	1630 bp proximal
Tssr632	transcription start site region 632	1808 bp upstream
Tssr19934	transcription start site region 19934	858 bp upstream
Tssr19935	transcription start site region 19935	1768 bp upstream
Tssr26038	transcription start site region 26038	33 bp upstream
Tssr26039	transcription start site region 26039	1474 bp downstream
Tssr26040	transcription start site region 26040	1507 bp downstream
Tssr26041	transcription start site region 26041	1524 bp downstream
Tssr26042	transcription start site region 26042	1569 bp downstream
Tssr26043	transcription start site region 26043	1632 bp downstream
Tssr26044	transcription start site region 26044	1707 bp downstream