rs49149792 SNP Detail

Summary

• ID
  rs49149792
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150019833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAACCCA CACCTACACT
  AGGCACAGAA GAGGCTCAAC ATATTCCCTC CATGCACACG AGCATTCTCT TCAGGAGCAA
  CAGCTAGTAT GTATGATCCT TCCAGACAGA GCAATCAACT GTGTGCCCTG CACCCAGCCA
  CCTCTCTATC TGTCAGCCTG GGAGGCCAGT GTCTGCGCTT TCTATGCACT GTCTTCTAAG
  M
  AAGAATGTGT CTGCACCGGA TCTGGCCACA CAAGCCCCTT GGCAGAGAAA ACAGACTTCT
  TGTCCCAAAC GTGACTGTCT AGTCTAATGT CAGCTTTAAG TTAAGCATCA CTGAGTTGGC
  GTCATGGCGC TTGCTTCCTG GCTTCAAGGC TGTCACACAC ATCCCAGAAT CTCTGGGCAC
  CAGGAGACAA CTGGCCAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148043549	ENSMUSSNP1431630	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49149792					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150019833 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377412	regulatory region 377412			1004 bp upstream
Rr605111	regulatory region 605111			1186 bp distal
Rr605112	regulatory region 605112			1489 bp proximal
Spsb1	splA/ryanodine receptor domain and SOCS box containing 1			Intron
				Noncoding-Transcript-Variant