rs49149783 SNP Detail

Summary

• ID
  rs49149783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130908808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAAGATG GCCCAGTGGT TAAGAGCACT GACTACTCTT
  CCAGAGGTCC TGAGTTCAAT TCTCAGCAAC CACATGGTGG CTCACAACCA TCTGTAATGG
  R
  ATCCAATGTC CTCTTCTGGT GTGTCTGAAG ACAGTGACAG TGTACCTACA TACATGAAAT
  AAATAAATAA ATATCTGAGA GAGACAGACA GACAGACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598323	ENSMUSSNP2098457	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49149783					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130908808 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	732 bp proximal
Tssr20240	transcription start site region 20240	1824 bp upstream
Tssr26336	transcription start site region 26336	398 bp downstream
Tssr26337	transcription start site region 26337	1237 bp downstream
Tssr26338	transcription start site region 26338	1567 bp downstream
Tssr26339	transcription start site region 26339	1641 bp downstream
Tssr26340	transcription start site region 26340	1723 bp downstream
Tssr26341	transcription start site region 26341	1988 bp downstream