rs49143087 SNP Detail

Summary

• ID
  rs49143087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:66988038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGAGAG CTGGAGTAAA
  TGGAGGCTTG CTCTTTTGTT ACAGCCACAG AGGGATGTTT GTTCTTGGAA GTTGCTTCGC
  CCCAGTGATT AGCTCTGGGC CAGGCCACTG TGACTTGTCA TTCAGACTCT AGGCTCCTCT
  GTTCCTTCCA CTGAAGAGTA TGCTCTGTGA CACATTTTAT GCTCACTCTC CTCTCTGGCT
  Y
  GGGTCCTCTT GACACAGATT TAAGTGCCTG TATTCCCTTA ATGGAACACC CTTTTCCTAG
  GAATTTCTAA GAATCTCAGA ATTTAGGCAA GCCATAGTGT CAAAACCAGT GCAAACCATT
  TGATTACCTA AATACCTCAT GTCTGTTCCA TTATTTTGCC CATGTATGAA GCTGAAAAGA
  AACAACAGCT GGTTTTCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60892262	NES15964103	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49143087					SNP	C	C	C	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892262	NES15964103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66988038 () rs orientation: forward

Symbol	Name	Function Class
Gm15644	predicted gene 15644	1431 bp upstream
Gng12	guanine nucleotide binding protein (G protein), gamma 12	Intron
Rr379521	regulatory region 379521	1099 bp downstream
Rr631572	regulatory region 631572	1908 bp distal
Rr631573	regulatory region 631573	1415 bp distal
Rr631574	regulatory region 631574	1985 bp proximal