rs49142816 SNP Detail

Summary

• ID
  rs49142816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77001362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTTTCG GGAGGTCACC
  AGCAGGCGCC TTTGTGATAA AGCGCGGGGT TTCTACCCCG GCAGTCTGGC ATTGCACCAA
  CCCCCAACTC AGGAGCCTCT TGGATATGTT GAGCAGGAGG AGAGCAGCCA GTTGCTGGTT
  AGCTGCAGAA TCTCTGAGCT GGTGGCAAAG CAGTTCTCAG TGCGCCCATG CTGCTGCGGT
  Y
  CTCACAGGGC AGCAAAGAAG GCGACGATTC CGTGGGCTTA GGAGCATTGT GGCCGGCCTG
  ACTGCGCTTG GCGCTCATCA GCATCAAAGG GGACCGCGCG CAACCCGACA CCACTGCAGG
  CGCGGGGGAC AGGGGCCTGG AGCTGCAGTG GTACACAAAG ACTAGCCGGC CACCGGAGTC
  CGGCCCCGGG CAAACGCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373612	NES15269433	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49142816					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373612	NES15269433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77001362 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	Intron
Cpgi1754	CpG island 1754	within coordinates
Gm67721	predicted gene, 67721	1112 bp upstream
Rr384956	regulatory region 384956	1845 bp upstream
Rr434420	regulatory region 434420	1010 bp proximal
Rr434421	regulatory region 434421	1123 bp proximal
Tssr94211	transcription start site region 94211	1091 bp upstream
Tssr98227	transcription start site region 98227	973 bp downstream
Tssr98228	transcription start site region 98228	1017 bp downstream