rs49140564 SNP Detail

Summary

• ID
  rs49140564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130742279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGAAATC AGCCTTCAAA ATACAAACTA TTGACATTTT
  CAAATAAAAG CACTATATTT TCAGTTAGTG TTCCAAGTTT AAACAGTCTA GCAATCAAAG
  R
  CCAACATGTT TAAGTGTGGC ACACCGTCTT CTATTTTATG GGAACTATCA TTTTGCACTA
  ATGTTGCCTC TGTTTACCCG AGTGAAGCCA GATTTTCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135902652	ENSMUSSNP5538429	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49140564					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130742279 () rs orientation: forward

Symbol	Name	Function Class
Gm65596	predicted gene, 65596	1238 bp upstream
Rr585244	regulatory region 585244	1249 bp distal
Rr585245	regulatory region 585245	941 bp distal
Tssr35670	transcription start site region 35670	1291 bp upstream