rs49140541 SNP Detail

Summary

• ID
  rs49140541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137044989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGAAATGG GTGAAGGTCT AATTTTATGG TTTAGTGTGT
  AAGAATCCAT TAGCATCCTC CTCTAGTAAG CCTGTACCTA AACGTATATG AAAGATTAAT
  Y
  GGTTGGGATG TGAAATCTGT GACTGCGGAA TTCAGGAATC TTCTGACTCC ATTCTTCACA
  CAAGCACTGT GTTCAGGGGT CGGGCTGTGC AACCATCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135939670	ENSMUSSNP4935364	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320975378	CHEV_3_137002192	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49140541					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137044989 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	1835 bp upstream
Rr585936	regulatory region 585936	1559 bp proximal
Tssr31897	transcription start site region 31897	1804 bp upstream
Tssr31898	transcription start site region 31898	1848 bp upstream
Tssr31899	transcription start site region 31899	1875 bp upstream
Tssr31900	transcription start site region 31900	1919 bp upstream
Tssr31901	transcription start site region 31901	1951 bp upstream
Tssr31902	transcription start site region 31902	1984 bp upstream