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rs49140540 SNP Detail
Summary
  • ID
    rs49140540
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr1:149736929 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      TCTCCCAGA AGCTCTCGCT CTCTCACCTT
    TGGGTCCTTG AGCCTCATCA TCACTGTCGG AGCTGTCATT ACTCACGATG TGCTTTGCTG
    TAATATTTTC TATGGGAAGA AGACAAAATc attgagacat cttggggatc agattcacaa
    S
    taaatttacg gggcagacga gggagtattg gtgcaagtct ttaattccag ctcgcaggag
    gtgggggcag gcagaactct ccgggttcaa ggccagttcc aagccaacca gagctatgtg
    gtggtcgcat tcctttTTAA CTGTGGAGAA                                 
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
MSM/Ms
SM/J
ss145700895 ENSMUSSNP6057678 ENSEMBL ENSEMBL_Sanger f SNP C C C G
ss320043132 CHEV_1_151708308 CHEVERUD SCREENING_POP f SNP C G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
MSM/Ms
SM/J
rs49140540 SNP C C C C G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149736929 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pla2g4a phospholipase A2, group IVA (cytosolic, calcium-dependent) Intron
Rr420110 regulatory region 420110 1632 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory