rs49140540 SNP Detail

Summary

• ID
  rs49140540
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149736929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTCCCAGA AGCTCTCGCT CTCTCACCTT
  TGGGTCCTTG AGCCTCATCA TCACTGTCGG AGCTGTCATT ACTCACGATG TGCTTTGCTG
  TAATATTTTC TATGGGAAGA AGACAAAATc attgagacat cttggggatc agattcacaa
  S
  taaatttacg gggcagacga gggagtattg gtgcaagtct ttaattccag ctcgcaggag
  gtgggggcag gcagaactct ccgggttcaa ggccagttcc aagccaacca gagctatgtg
  gtggtcgcat tcctttTTAA CTGTGGAGAA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145700895	ENSMUSSNP6057678	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C		G
ss320043132	CHEV_1_151708308	CHEVERUD	SCREENING_POP	f	SNP				C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49140540					SNP	C	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149736929 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1632 bp proximal