rs49139813 SNP Detail

Summary

• ID
  rs49139813
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15257866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCCCAC CAGGAAATTG
  TCTTCATAAA AGACATTTTT TAGCACAGCC TGGAAGTTCT CAGTCACAGA CAGTGACTCC
  TGGGATGTTT CTTTGCATTT ATAGATTAAG TGTATTTCTT GAAGAGTTAA GACTAGAAAA
  CAAACAAACA AACAAACAAA CAAACAAACA AAACTAAAAA TGACCTGAAA GAACATCCAA
  W
  GACTCTCCTT TCCTTTCAGC TGTGATGTCA TGGTATCTGA CACTAAACTA CTCTCAATTA
  CGAAACTTTA GATAAAAGTA AACAAACAAA AACTGGAAAA CTGTTTCAAA GTAGTCAGTC
  ATATCTATTC CTCATTGCCT TGGACATGAA GTCTTCTAAT TTGATATCAA GAAAGCAATT
  AAGCTTCATG TAGTCTTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134620089	ENSMUSSNP185563	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49139813					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15257866 () rs orientation: forward

Symbol	Name	Function Class
Rr573761	regulatory region 573761	1450 bp proximal
Rr573762	regulatory region 573762	1600 bp proximal
Rr573763	regulatory region 573763	1753 bp proximal