rs49139642 SNP Detail

Summary

• ID
  rs49139642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101127427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACACCC CAGCCCTCAG
  GTTTTGTGTT TTCACTTTTG AAAGATATAA GGCACAAGTC TTGATGAAAT TGTGAGTTTA
  GACACAACTT TGTGATTTTT CTTAAAGATT TATTTTAATT ATGTGTATAT ATGTATGTGT
  TTATGCACAT CAGTGCAGTA CCCACAAAGG CCAGAAGAGG GCATCAGATC CCCACTGGAG
  Y
  CACAGGTTCA GGTGGTTGTG ACCTGCCTGA CTCAGGTGTT GGGAACTGAA CTCAGATCCT
  CTGTAAGAGT TGTGTCTAGT CATAACTGCT GAGCCATCTC TCCAACTCCA TAGACACAAA
  CCTGAATGAG CAGGGATCTG TACAATCATG TGACGTCCTC CTATCACGTG ATAAACCAGA
  AACTTGCCAA GCTTTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135545488	ENSMUSSNP4316923	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49139642					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101127427 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	13 bp distal