rs49136421 SNP Detail

Summary

• ID
  rs49136421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90570095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGACAC AACATGGATA
  TTACATTAAT AAACTTGTAT AAGCCATGGT CATTTCCACA AGAGCCACAC AAGAGCAAGC
  CAGCTGAAAT CCCTGAACTG ATAGAGAGGG GTTGCTTTCC AGCCTTTTAT CTTTACTGAG
  TAGCTACTGT CAGATGATAG CTTCTCTGGA AGAGAGAATT ATTGTGATTT GAGGGCATGG
  Y
  CATTGGTAGG TTTCTCACTC TTCACACTCT TATACATGTG GACAGCACTG ATTGGACTTA
  GTGGGTTATA AAAAAAGGAA GAAAACAACA TGAAGTTGAG TGGGAGAGGG CTTTTGAGAT
  AAGAGGGAAG TCGGAGGGGC AAAATGGAGA GTGTGCATGA TATTTCATTG TATATGTGTA
  TGAAATTCTC AAAAGTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135478407	ENSMUSSNP1534849	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49136421					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90570095 () rs orientation: forward

Symbol	Name	Function Class
Rr580434	regulatory region 580434	1630 bp proximal